avgfp · Graph CNN

paper_avgfp_gcn_20261103-133604

Metrics

Set	mse	pearsonr	spearmanr	r2
test	0.1023	0.9537	0.8684	0.9088
train	0.0823	0.9631	0.8768	0.9268
validation	0.0998	0.9549	0.8709	0.9113

Loss per epoch

training validation

Config

name: paper_avgfp_gcn
task: dms
data:
  dataset: avgfp
  encoding: one_hot,aa_index
  split_dir: avgfp/splits/main
  graph_threshold: 7
model:
  name: gcn
  filters:
  - 128
  - 128
  hidden:
  - 100
  dropout: 0.2
train:
  epochs: 300
  batch_size: 32
  learning_rate: 0.0001
  patience: 15
  min_delta: 1.0e-05
  seed: 7