bgl3 · Graph CNN

paper_bgl3_gcn_20261103-173058

Metrics

Set	mse	pearsonr	spearmanr	r2
test	1.3173	0.5548	0.4998	0.3068
train	1.2349	0.6119	0.5791	0.3720
validation	1.4005	0.5405	0.4934	0.2915

Loss per epoch

training validation

Config

name: paper_bgl3_gcn
task: dms
data:
  dataset: bgl3
  encoding: one_hot,aa_index
  split_dir: bgl3/splits/main
  graph_threshold: 6
model:
  name: gcn
  filters:
  - 32
  hidden:
  - 100
  dropout: 0.2
train:
  epochs: 300
  batch_size: 128
  learning_rate: 0.0001
  patience: 15
  min_delta: 1.0e-05
  seed: 7