bgl3 · Graph CNN

paper_bgl3_gcn_20261103-212838

Metrics

Set	mse	pearsonr	spearmanr	r2
test	1.2946	0.5653	0.5072	0.3187
train	1.1805	0.6376	0.6082	0.3997
validation	1.3835	0.5484	0.5046	0.3002

Loss per epoch

training validation

Config

name: paper_bgl3_gcn
task: dms
data:
  dataset: bgl3
  encoding: one_hot,aa_index
  split_dir: bgl3/splits/main
  graph_threshold: 6
model:
  name: gcn
  filters:
  - 32
  hidden:
  - 100
  dropout: 0.2
train:
  epochs: 300
  batch_size: 128
  learning_rate: 0.0001
  patience: 15
  min_delta: 1.0e-05
  seed: 7