gb1 · Graph CNN

paper_gb1_gcn_20261103-134018

Metrics

Set	mse	pearsonr	spearmanr	r2
test	0.1965	0.9811	0.9794	0.9624
train	0.1562	0.9850	0.9841	0.9699
validation	0.1997	0.9807	0.9801	0.9616

Loss per epoch

training validation

Config

name: paper_gb1_gcn
task: dms
data:
  dataset: gb1
  encoding: one_hot,aa_index
  split_dir: gb1/splits/main
  graph_threshold: 7
model:
  name: gcn
  filters:
  - 128
  - 128
  - 128
  - 128
  - 128
  hidden:
  - 100
  dropout: 0.2
train:
  epochs: 300
  batch_size: 32
  learning_rate: 0.0001
  patience: 15
  min_delta: 1.0e-05
  seed: 7