gb1 · Graph CNN

paper_gb1_gcn_20261103-173202

Metrics

Set	mse	pearsonr	spearmanr	r2
test	0.1935	0.9813	0.9794	0.9630
train	0.1612	0.9844	0.9834	0.9690
validation	0.1986	0.9807	0.9800	0.9618

Loss per epoch

training validation

Config

name: paper_gb1_gcn
task: dms
data:
  dataset: gb1
  encoding: one_hot,aa_index
  split_dir: gb1/splits/main
  graph_threshold: 7
model:
  name: gcn
  filters:
  - 128
  - 128
  - 128
  - 128
  - 128
  hidden:
  - 100
  dropout: 0.2
train:
  epochs: 300
  batch_size: 32
  learning_rate: 0.0001
  patience: 15
  min_delta: 1.0e-05
  seed: 7