pab1 · Sequence CNN

paper_pab1_cnn_20261103-135916

Metrics

Set	mse	pearsonr	spearmanr	r2
test	0.4863	0.9340	0.9140	0.8721
train	0.3232	0.9563	0.9338	0.9140
validation	0.4523	0.9355	0.9145	0.8752

Loss per epoch

training validation

Config

name: paper_pab1_cnn
task: dms
data:
  dataset: pab1
  encoding: one_hot,aa_index
  split_dir: pab1/splits/main
model:
  name: cnn
  conv:
  - - 128
    - 17
  - - 128
    - 17
  - - 128
    - 17
  hidden:
  - 100
  dropout: 0.2
train:
  epochs: 300
  batch_size: 128
  learning_rate: 0.0001
  patience: 15
  min_delta: 1.0e-05
  seed: 7