pab1 · Graph CNN

paper_pab1_gcn_20261103-185016

Metrics

Set	mse	pearsonr	spearmanr	r2
test	0.5696	0.9226	0.9116	0.8502
train	0.5078	0.9304	0.9245	0.8649
validation	0.5418	0.9226	0.9125	0.8505

Loss per epoch

training validation

Config

name: paper_pab1_gcn
task: dms
data:
  dataset: pab1
  encoding: one_hot,aa_index
  split_dir: pab1/splits/main
  graph_threshold: 7
model:
  name: gcn
  filters:
  - 32
  hidden:
  - 100
  dropout: 0.2
train:
  epochs: 300
  batch_size: 128
  learning_rate: 0.0001
  patience: 15
  min_delta: 1.0e-05
  seed: 7