ube4b · Sequence CNN

paper_ube4b_cnn_20261103-180712

Metrics

Set	mse	pearsonr	spearmanr	r2
test	2.1360	0.6547	0.6226	0.4277
train	1.9828	0.6917	0.6563	0.4783
validation	2.1787	0.6544	0.6210	0.4278

Loss per epoch

training validation

Config

name: paper_ube4b_cnn
task: dms
data:
  dataset: ube4b
  encoding: one_hot,aa_index
  split_dir: ube4b/splits/main
model:
  name: cnn
  conv:
  - - 128
    - 3
  - - 128
    - 3
  - - 128
    - 3
  - - 128
    - 3
  - - 128
    - 3
  hidden:
  - 100
  dropout: 0.2
train:
  epochs: 300
  batch_size: 128
  learning_rate: 0.0001
  patience: 15
  min_delta: 1.0e-05
  seed: 7