ube4b · Graph CNN

paper_ube4b_gcn_20261103-141541

Metrics

Set	mse	pearsonr	spearmanr	r2
test	2.1395	0.6536	0.6228	0.4268
train	2.0363	0.6827	0.6482	0.4643
validation	2.1721	0.6563	0.6234	0.4296

Loss per epoch

training validation

Config

name: paper_ube4b_gcn
task: dms
data:
  dataset: ube4b
  encoding: one_hot,aa_index
  split_dir: ube4b/splits/main
  graph_threshold: 7
model:
  name: gcn
  filters:
  - 128
  - 128
  - 128
  hidden:
  - 100
  dropout: 0.2
train:
  epochs: 300
  batch_size: 128
  learning_rate: 0.0001
  patience: 15
  min_delta: 1.0e-05
  seed: 7