Protein Engineering

avgfp · Sequence CNN

reference_avgfp_cnn_plm_contiguousf0_20261104-175345

Metrics

Setmsepearsonrspearmanrr2above_wt_nabove_wt_spearmanrbudget_to_maxhit_rate_at_10mean_at_10max_at_10precision_at_10tie_share_at_10captured_at_10hit_rate_at_50mean_at_50max_at_50precision_at_50tie_share_at_50captured_at_50hit_rate_at_100mean_at_100max_at_100precision_at_100tie_share_at_100captured_at_100hit_rate_at_1pctmean_at_1pctmax_at_1pctprecision_at_1pcttie_share_at_1pctcaptured_at_1pct
train0.61060.36310.40200.04462295.00000.04245158.00000.50003.70853.83190.00000.00000.56160.46003.71103.96330.02000.00000.61660.46003.71143.96330.02000.00000.64690.44123.70984.06630.02940.00000.6600
validation1.08950.16660.1688-0.083760.0000-0.023337.00000.30003.38473.76960.00000.00000.51760.22003.22293.99230.18000.00000.40660.13003.19463.99230.24000.00000.39450.16673.20003.76180.00000.00000.3332
test0.67510.32770.27900.0494109.00000.02027.00000.30003.69223.99610.20000.00000.68070.28003.65283.99610.16000.00000.73140.24003.60903.99610.23000.00000.71010.42863.71253.99610.14290.00000.6903

Loss per epoch

training validation

Config

name: reference_avgfp_cnn_plm_contiguousf0
task: dms
data:
  dataset: avgfp
  encoding: one_hot,aa_index,plm,plm_sum
  split_dir: null
  split_scheme: contiguous
  split_fold: 0
model:
  name: cnn
  conv:
  - - 128
    - 3
  - - 128
    - 3
  - - 128
    - 3
  - - 128
    - 3
  - - 128
    - 3
  hidden:
  - 100
  dropout: 0.2
train:
  epochs: 300
  batch_size: 64
  learning_rate: 0.001
  patience: 15
  min_delta: 1.0e-05
  seed: 7