Protein Engineering

avgfp · Sequence CNN

reference_avgfp_cnn_plm_randomf0_20261104-174442

Metrics

Setmsepearsonrspearmanrr2above_wt_nabove_wt_spearmanrbudget_to_maxhit_rate_at_10mean_at_10max_at_10precision_at_10tie_share_at_10captured_at_10hit_rate_at_50mean_at_50max_at_50precision_at_50tie_share_at_50captured_at_50hit_rate_at_100mean_at_100max_at_100precision_at_100tie_share_at_100captured_at_100hit_rate_at_1pctmean_at_1pctmax_at_1pctprecision_at_1pcttie_share_at_1pctcaptured_at_1pct
train0.06000.97290.89230.94652984.00000.2945591.00000.60003.77563.98110.00000.00000.79980.70003.79354.05640.04000.00000.84690.74003.80214.05640.14000.00000.87040.67283.77254.05640.22220.00000.8869
validation0.09520.95700.86420.91581025.00000.1962586.00000.80003.80363.96680.00000.00000.81020.76003.79144.08600.14000.00000.85880.74003.78614.11360.19000.00000.88440.72223.78214.11360.21300.00000.8847
test0.09350.95780.86550.91721035.00000.23134.00001.00003.84074.10680.20000.00000.85310.84003.80784.10680.12000.00000.87380.73003.77614.10680.17000.00000.87940.70373.77284.10680.16670.00000.8800

Loss per epoch

training validation

Config

name: reference_avgfp_cnn_plm_randomf0
task: dms
data:
  dataset: avgfp
  encoding: one_hot,aa_index,plm,plm_sum
  split_dir: null
  split_scheme: random
  split_fold: 0
model:
  name: cnn
  conv:
  - - 128
    - 3
  - - 128
    - 3
  - - 128
    - 3
  - - 128
    - 3
  - - 128
    - 3
  hidden:
  - 100
  dropout: 0.2
train:
  epochs: 300
  batch_size: 64
  learning_rate: 0.001
  patience: 15
  min_delta: 1.0e-05
  seed: 7