avgfp · Sequence CNN

reference_avgfp_cnn_plm_randomf3_20261105-035119

Metrics

Set	mse	pearsonr	spearmanr	r2	above_wt_n	above_wt_spearmanr	budget_to_max	hit_rate_at_10	mean_at_10	max_at_10	precision_at_10	captured_at_10	hit_rate_at_50	mean_at_50	max_at_50	precision_at_50	captured_at_50	hit_rate_at_100	mean_at_100	max_at_100	precision_at_100	captured_at_100	hit_rate_at_1pct	mean_at_1pct	max_at_1pct	precision_at_1pct	captured_at_1pct
train	0.0628	0.9724	0.8884	0.9443	3066.0000	0.2236	222.0000	0.9000	3.7803	3.9279	0.0000	0.7822	0.7600	3.7919	4.1136	0.0600	0.8280	0.7800	3.7848	4.1136	0.0800	0.8449	0.6698	3.7667	4.1145	0.1821	0.8779
validation	0.0923	0.9585	0.8689	0.9175	1013.0000	0.2853	479.0000	0.7000	3.8079	3.9393	0.0000	0.8454	0.7400	3.7840	3.9808	0.1200	0.8643	0.6900	3.7672	4.0292	0.2000	0.8748	0.6852	3.7661	4.0292	0.2037	0.8767
test	0.0977	0.9560	0.8634	0.9129	965.0000	0.2731	516.0000	0.8000	3.8243	4.0564	0.1000	0.8602	0.6400	3.7663	4.0564	0.1200	0.8599	0.6400	3.7642	4.0564	0.1800	0.8798	0.6204	3.7579	4.0564	0.1667	0.8778

Loss per epoch

training validation

Config

name: reference_avgfp_cnn_plm_randomf3
task: dms
data:
  dataset: avgfp
  encoding: one_hot,aa_index,plm,plm_sum
  split_dir: null
  split_scheme: random
  split_fold: 3
model:
  name: cnn
  conv:
  - - 128
    - 3
  - - 128
    - 3
  - - 128
    - 3
  - - 128
    - 3
  - - 128
    - 3
  hidden:
  - 100
  dropout: 0.2
train:
  epochs: 300
  batch_size: 64
  learning_rate: 0.001
  patience: 15
  min_delta: 1.0e-05
  seed: 7