Protein Engineering

avgfp · Fully connected

reference_avgfp_fc_plm_contiguousf4_20261105-043216

Metrics

Setmsepearsonrspearmanrr2above_wt_nabove_wt_spearmanrbudget_to_maxhit_rate_at_10mean_at_10max_at_10precision_at_10tie_share_at_10captured_at_10hit_rate_at_50mean_at_50max_at_50precision_at_50tie_share_at_50captured_at_50hit_rate_at_100mean_at_100max_at_100precision_at_100tie_share_at_100captured_at_100hit_rate_at_1pctmean_at_1pctmax_at_1pctprecision_at_1pcttie_share_at_1pctcaptured_at_1pct
train0.28580.86290.79410.68691613.00000.21952761.00000.50003.76783.97050.00000.00000.71920.48003.71684.10790.06000.00000.71810.51003.72574.10790.08000.00000.75710.49153.71654.10790.06780.00000.7545
validation0.69380.19690.08400.0231109.00000.0796205.00000.00002.43643.59580.00000.0000-0.97710.18002.94013.91780.12000.0000-0.36310.13003.01243.91780.13000.0000-0.26960.00002.56003.46110.00000.0000-0.7940
test0.4471-0.0227-0.1040-0.0917156.00000.0689634.00000.20003.26563.77060.00000.0000-0.27670.16003.33723.83560.02000.0000-0.14820.15003.25683.88220.09000.0000-0.36090.25003.23803.77060.00000.0000-0.3284

Loss per epoch

training validation

Config

name: reference_avgfp_fc_plm_contiguousf4
task: dms
data:
  dataset: avgfp
  encoding: one_hot,aa_index,plm,plm_sum
  split_dir: null
  split_scheme: contiguous
  split_fold: 4
model:
  name: fcn
  hidden:
  - 100
  - 100
  - 100
  dropout: 0.2
train:
  epochs: 300
  batch_size: 32
  learning_rate: 0.0001
  patience: 15
  min_delta: 1.0e-05
  seed: 7