Protein Engineering

avgfp · Fully connected

reference_avgfp_fc_plm_modulof1_20261104-181112

Metrics

Setmsepearsonrspearmanrr2above_wt_nabove_wt_spearmanrbudget_to_maxhit_rate_at_10mean_at_10max_at_10precision_at_10tie_share_at_10captured_at_10hit_rate_at_50mean_at_50max_at_50precision_at_50tie_share_at_50captured_at_50hit_rate_at_100mean_at_100max_at_100precision_at_100tie_share_at_100captured_at_100hit_rate_at_1pctmean_at_1pctmax_at_1pctprecision_at_1pcttie_share_at_1pctcaptured_at_1pct
train0.53220.77420.71770.41601273.00000.05871525.00000.30003.64153.85870.00000.00000.61610.26003.67203.99120.02000.00000.68800.29003.65833.99120.03000.00000.70160.30343.66113.99120.03370.00000.7000
validation0.49270.06490.0241-0.0599135.00000.0737629.00000.20003.10803.85010.00000.0000-0.43480.20003.39003.86300.10000.00000.08180.20003.34423.87800.15000.0000-0.01480.12502.99043.85010.00000.0000-0.6368
test0.5417-0.0135-0.0038-0.0724216.00000.1149591.00000.40003.19783.83140.00000.0000-0.18060.18003.17593.83140.04000.0000-0.25950.20003.21073.97910.11000.0000-0.21290.36363.21803.83140.00000.0000-0.1523

Loss per epoch

training validation

Config

name: reference_avgfp_fc_plm_modulof1
task: dms
data:
  dataset: avgfp
  encoding: one_hot,aa_index,plm,plm_sum
  split_dir: null
  split_scheme: modulo
  split_fold: 1
model:
  name: fcn
  hidden:
  - 100
  - 100
  - 100
  dropout: 0.2
train:
  epochs: 300
  batch_size: 32
  learning_rate: 0.0001
  patience: 15
  min_delta: 1.0e-05
  seed: 7