Protein Engineering

avgfp · Fully connected

reference_avgfp_fc_plm_modulof3_20261105-035816

Metrics

Setmsepearsonrspearmanrr2above_wt_nabove_wt_spearmanrbudget_to_maxhit_rate_at_10mean_at_10max_at_10precision_at_10tie_share_at_10captured_at_10hit_rate_at_50mean_at_50max_at_50precision_at_50tie_share_at_50captured_at_50hit_rate_at_100mean_at_100max_at_100precision_at_100tie_share_at_100captured_at_100hit_rate_at_1pctmean_at_1pctmax_at_1pctprecision_at_1pcttie_share_at_1pctcaptured_at_1pct
train0.37420.81230.74470.54731547.00000.2136413.00000.60003.78493.97350.00000.00000.71630.50003.73324.00420.08000.00000.71970.43003.68864.11360.08000.00000.69920.42993.68994.11360.08410.00000.7035
validation0.5105-0.0189-0.0537-0.0181152.0000-0.0011497.00000.00002.19353.63450.00000.0000-1.87910.08002.86713.82290.06000.0000-0.90510.14003.04833.82890.11000.0000-0.59770.00002.17173.63450.00000.0000-1.8815
test0.73590.0617-0.0657-0.0458111.0000-0.1192439.00000.00001.77583.51910.00000.0000-1.96790.06002.65443.88410.02000.0000-0.85020.10002.89133.88410.09000.0000-0.50640.00001.66253.39840.00000.0000-2.0659

Loss per epoch

training validation

Config

name: reference_avgfp_fc_plm_modulof3
task: dms
data:
  dataset: avgfp
  encoding: one_hot,aa_index,plm,plm_sum
  split_dir: null
  split_scheme: modulo
  split_fold: 3
model:
  name: fcn
  hidden:
  - 100
  - 100
  - 100
  dropout: 0.2
train:
  epochs: 300
  batch_size: 32
  learning_rate: 0.0001
  patience: 15
  min_delta: 1.0e-05
  seed: 7