Protein Engineering

avgfp · Fully connected

reference_avgfp_fc_plm_modulof4_20261105-042211

Metrics

Setmsepearsonrspearmanrr2above_wt_nabove_wt_spearmanrbudget_to_maxhit_rate_at_10mean_at_10max_at_10precision_at_10tie_share_at_10captured_at_10hit_rate_at_50mean_at_50max_at_50precision_at_50tie_share_at_50captured_at_50hit_rate_at_100mean_at_100max_at_100precision_at_100tie_share_at_100captured_at_100hit_rate_at_1pctmean_at_1pctmax_at_1pctprecision_at_1pcttie_share_at_1pctcaptured_at_1pct
train0.31590.83970.77410.65041414.00000.18323204.00000.40003.73363.90810.00000.00000.68740.56003.75024.10790.08000.00000.76220.50003.73694.10790.11000.00000.78250.45873.72854.10790.11010.00000.7781
validation0.57350.10110.0386-0.0092146.00000.032786.00000.20002.63143.93060.10000.0000-1.06640.18003.19193.95460.10000.0000-0.22050.20003.27574.01920.14000.0000-0.06930.14292.56443.80570.00000.0000-1.1373
test0.5326-0.0262-0.0521-0.0621152.00000.1397420.00000.00002.05133.61740.00000.0000-2.11420.04002.67633.82400.04000.0000-1.27790.13002.98603.82890.12000.0000-0.72980.00002.21233.61740.00000.0000-1.8156

Loss per epoch

training validation

Config

name: reference_avgfp_fc_plm_modulof4
task: dms
data:
  dataset: avgfp
  encoding: one_hot,aa_index,plm,plm_sum
  split_dir: null
  split_scheme: modulo
  split_fold: 4
model:
  name: fcn
  hidden:
  - 100
  - 100
  - 100
  dropout: 0.2
train:
  epochs: 300
  batch_size: 32
  learning_rate: 0.0001
  patience: 15
  min_delta: 1.0e-05
  seed: 7