Protein Engineering

avgfp · Fully connected

reference_avgfp_fc_plm_randomf4_20261105-041006

Metrics

Setmsepearsonrspearmanrr2above_wt_nabove_wt_spearmanrbudget_to_maxhit_rate_at_10mean_at_10max_at_10precision_at_10tie_share_at_10captured_at_10hit_rate_at_50mean_at_50max_at_50precision_at_50tie_share_at_50captured_at_50hit_rate_at_100mean_at_100max_at_100precision_at_100tie_share_at_100captured_at_100hit_rate_at_1pctmean_at_1pctmax_at_1pctprecision_at_1pcttie_share_at_1pctcaptured_at_1pct
train0.06280.97320.86940.94422996.00000.28141097.00000.90003.81803.95630.00000.00000.80790.80003.81174.08600.12000.00000.84970.75003.79574.11360.15000.00000.85990.64813.76984.11450.20680.00000.8834
validation0.08230.96410.86120.92721035.00000.236817.00000.60003.73813.89370.00000.00000.78170.62003.72044.10680.14000.00000.80980.66003.74194.10680.18000.00000.85350.67593.74434.10680.16670.00000.8583
test0.07680.96640.86620.93131013.00000.2593331.00000.60003.72833.91220.00000.00000.78730.70003.77444.01390.16000.00000.85700.63003.76394.02920.22000.00000.87220.62043.75794.02920.21300.00000.8703

Loss per epoch

training validation

Config

name: reference_avgfp_fc_plm_randomf4
task: dms
data:
  dataset: avgfp
  encoding: one_hot,aa_index,plm,plm_sum
  split_dir: null
  split_scheme: random
  split_fold: 4
model:
  name: fcn
  hidden:
  - 100
  - 100
  - 100
  dropout: 0.2
train:
  epochs: 300
  batch_size: 32
  learning_rate: 0.0001
  patience: 15
  min_delta: 1.0e-05
  seed: 7