Protein Engineering

avgfp · Linear

reference_avgfp_lr_contiguousf0_20261104-144901

Metrics

Setmsepearsonrspearmanrr2above_wt_nabove_wt_spearmanrbudget_to_maxhit_rate_at_10mean_at_10max_at_10precision_at_10captured_at_10hit_rate_at_50mean_at_50max_at_50precision_at_50captured_at_50hit_rate_at_100mean_at_100max_at_100precision_at_100captured_at_100hit_rate_at_1pctmean_at_1pctmax_at_1pctprecision_at_1pctcaptured_at_1pct
train0.55440.42180.32950.13262295.00000.09452334.00000.10003.36653.77040.00000.15410.26003.45633.96200.02000.28530.18003.35723.96200.02000.16370.22063.34413.96200.02210.1493
validation1.2247-0.1583-0.0948-0.218260.0000-0.2086414.00000.00001.45491.85500.00000.0000-1.30010.04001.96323.75200.04000.0000-0.91430.08002.41643.86780.16000.0000-0.45950.00001.46081.85500.00000.0000-1.2554
test0.8346-0.1378-0.0755-0.1751109.00000.1002137.00000.20002.60213.86550.00000.0000-0.75840.18002.69783.91780.06000.0000-0.73510.17002.83423.91780.16000.0000-0.56220.28572.25983.86550.00000.0000-1.1807

Loss per epoch

training validation

Config

name: reference_avgfp_lr_contiguousf0
task: dms
data:
  dataset: avgfp
  encoding: one_hot,aa_index
  split_dir: null
  split_scheme: contiguous
  split_fold: 0
model:
  name: lr
train:
  epochs: 300
  batch_size: 128
  learning_rate: 0.0001
  patience: 15
  min_delta: 1.0e-05
  seed: 7