Protein Engineering

avgfp · Linear

reference_avgfp_lr_contiguousf4_20261104-170415

Metrics

Setmsepearsonrspearmanrr2above_wt_nabove_wt_spearmanrbudget_to_maxhit_rate_at_10mean_at_10max_at_10precision_at_10tie_share_at_10captured_at_10hit_rate_at_50mean_at_50max_at_50precision_at_50tie_share_at_50captured_at_50hit_rate_at_100mean_at_100max_at_100precision_at_100tie_share_at_100captured_at_100hit_rate_at_1pctmean_at_1pctmax_at_1pctprecision_at_1pcttie_share_at_1pctcaptured_at_1pct
train0.79200.38610.34250.13211613.00000.064811165.00000.30003.66313.77580.00000.00000.62090.20003.25253.95800.02000.00000.25180.22003.19823.95800.01000.00000.20540.21193.22293.95800.01690.00000.2334
validation0.8325-0.1364-0.0745-0.1723109.00000.1005136.00000.20002.60213.86550.00000.0000-0.75840.18002.69783.91780.06000.0000-0.73510.17002.83423.91780.16000.0000-0.56220.28572.57903.86550.00000.0000-0.7696
test0.5876-0.1291-0.0681-0.4346156.00000.0315690.00000.30002.76813.86270.10000.0000-1.29140.18002.92543.86270.06000.0000-1.10030.19002.98883.86270.13000.0000-1.03030.37502.83083.86270.00000.0000-1.1473

Loss per epoch

training validation

Config

name: reference_avgfp_lr_contiguousf4
task: dms
data:
  dataset: avgfp
  encoding: one_hot,aa_index
  split_dir: null
  split_scheme: contiguous
  split_fold: 4
model:
  name: lr
train:
  epochs: 300
  batch_size: 128
  learning_rate: 0.0001
  patience: 15
  min_delta: 1.0e-05
  seed: 7