Protein Engineering

avgfp · Linear

reference_avgfp_lr_modulof0_20261104-144041

Metrics

Setmsepearsonrspearmanrr2above_wt_nabove_wt_spearmanrbudget_to_maxhit_rate_at_10mean_at_10max_at_10precision_at_10captured_at_10hit_rate_at_50mean_at_50max_at_50precision_at_50captured_at_50hit_rate_at_100mean_at_100max_at_100precision_at_100captured_at_100hit_rate_at_1pctmean_at_1pctmax_at_1pctprecision_at_1pctcaptured_at_1pct
train0.46720.74560.66360.47491210.00000.1386972.00000.30003.60673.81910.00000.56950.32003.53784.03140.02000.54630.33003.58944.09560.06000.62670.31913.58304.09560.05320.6173
validation0.6318-0.2025-0.1410-0.2507216.00000.06251103.00000.10001.82563.82360.00000.0000-2.22890.18002.79473.93470.08000.0000-0.95170.16002.84373.93470.13000.0000-0.93590.09091.81063.82360.00000.0000-2.2797
test0.6635-0.0915-0.0803-0.1675146.00000.0923197.00000.20003.10723.74680.00000.0000-0.31860.12003.09173.85630.04000.0000-0.40770.16003.10083.90520.12000.0000-0.42390.14293.20753.74680.00000.0000-0.1563

Loss per epoch

training validation

Config

name: reference_avgfp_lr_modulof0
task: dms
data:
  dataset: avgfp
  encoding: one_hot,aa_index
  split_dir: null
  split_scheme: modulo
  split_fold: 0
model:
  name: lr
train:
  epochs: 300
  batch_size: 128
  learning_rate: 0.0001
  patience: 15
  min_delta: 1.0e-05
  seed: 7