Protein Engineering

avgfp · Linear

reference_avgfp_lr_modulof3_20261104-160953

Metrics

Setmsepearsonrspearmanrr2above_wt_nabove_wt_spearmanrbudget_to_maxhit_rate_at_10mean_at_10max_at_10precision_at_10captured_at_10hit_rate_at_50mean_at_50max_at_50precision_at_50captured_at_50hit_rate_at_100mean_at_100max_at_100precision_at_100captured_at_100hit_rate_at_1pctmean_at_1pctmax_at_1pctprecision_at_1pctcaptured_at_1pct
train0.83850.14960.1236-0.01441547.00000.05862263.00000.00002.75593.68910.0000-0.32580.02002.60663.74680.0000-0.51710.06002.71253.83430.0000-0.41780.07482.77193.83430.0000-0.3513
validation0.6033-0.0939-0.0403-0.2032152.00000.0375455.00000.50003.06243.89560.10000.0000-0.44280.24003.05443.89560.10000.0000-0.53900.23003.09593.89560.18000.0000-0.49690.50003.14773.89560.12500.0000-0.2965
test0.8293-0.1238-0.0284-0.1785111.00000.0568479.00000.30002.12343.85660.10000.0000-1.48460.16002.37093.85660.10000.0000-1.29950.17002.81893.89210.16000.0000-0.62870.28572.07203.85660.00000.0000-1.5123

Loss per epoch

training validation

Config

name: reference_avgfp_lr_modulof3
task: dms
data:
  dataset: avgfp
  encoding: one_hot,aa_index
  split_dir: null
  split_scheme: modulo
  split_fold: 3
model:
  name: lr
train:
  epochs: 300
  batch_size: 128
  learning_rate: 0.0001
  patience: 15
  min_delta: 1.0e-05
  seed: 7