Protein Engineering

avgfp · Linear

reference_avgfp_lr_modulof4_20261104-165650

Metrics

Setmsepearsonrspearmanrr2above_wt_nabove_wt_spearmanrbudget_to_maxhit_rate_at_10mean_at_10max_at_10precision_at_10tie_share_at_10captured_at_10hit_rate_at_50mean_at_50max_at_50precision_at_50tie_share_at_50captured_at_50hit_rate_at_100mean_at_100max_at_100precision_at_100tie_share_at_100captured_at_100hit_rate_at_1pctmean_at_1pctmax_at_1pctprecision_at_1pcttie_share_at_1pctcaptured_at_1pct
train0.53900.69710.63470.40341414.00000.14668837.00000.70003.77753.90810.00000.00000.72820.32003.56373.90810.00000.00000.57450.30003.56204.08600.04000.00000.59840.32113.57664.08600.04590.00000.6174
validation0.6660-0.0878-0.0775-0.1719146.00000.0871204.00000.20003.10723.74680.00000.0000-0.31860.12003.09523.90520.06000.0000-0.40130.16003.10083.90520.12000.0000-0.42390.14293.20753.74680.00000.0000-0.1563
test0.6118-0.1108-0.0534-0.2200152.00000.0448478.00000.50003.06243.89560.10000.0000-0.44280.24003.10413.89560.10000.0000-0.44200.23003.05583.89560.18000.0000-0.58190.50003.14773.89560.12500.0000-0.2965

Loss per epoch

training validation

Config

name: reference_avgfp_lr_modulof4
task: dms
data:
  dataset: avgfp
  encoding: one_hot,aa_index
  split_dir: null
  split_scheme: modulo
  split_fold: 4
model:
  name: lr
train:
  epochs: 300
  batch_size: 128
  learning_rate: 0.0001
  patience: 15
  min_delta: 1.0e-05
  seed: 7