Protein Engineering

avgfp · Linear

reference_avgfp_lr_plm_contiguousf0_20261104-175409

Metrics

Setmsepearsonrspearmanrr2above_wt_nabove_wt_spearmanrbudget_to_maxhit_rate_at_10mean_at_10max_at_10precision_at_10tie_share_at_10captured_at_10hit_rate_at_50mean_at_50max_at_50precision_at_50tie_share_at_50captured_at_50hit_rate_at_100mean_at_100max_at_100precision_at_100tie_share_at_100captured_at_100hit_rate_at_1pctmean_at_1pctmax_at_1pctprecision_at_1pcttie_share_at_1pctcaptured_at_1pct
train0.44510.65180.53370.30362295.00000.12361728.00000.10003.63373.83110.00000.00000.47250.22003.60573.91040.00000.00000.47960.26003.60593.91040.00000.00000.50290.27213.61973.91040.01470.00000.5342
validation1.1997-0.00740.0220-0.193360.00000.0295120.00000.10002.33303.75480.00000.0000-0.47300.08002.84573.79700.06000.00000.01100.11002.79453.99120.14000.0000-0.04460.00002.43373.54960.00000.0000-0.3666
test0.8148-0.00950.0990-0.1474109.00000.1619223.00000.10002.50953.76820.00000.0000-0.88050.14002.73553.89980.08000.0000-0.67730.17003.01323.91780.16000.0000-0.26830.00002.02173.49810.00000.0000-1.4874

Loss per epoch

training validation

Config

name: reference_avgfp_lr_plm_contiguousf0
task: dms
data:
  dataset: avgfp
  encoding: one_hot,aa_index,plm,plm_sum
  split_dir: null
  split_scheme: contiguous
  split_fold: 0
model:
  name: lr
train:
  epochs: 300
  batch_size: 128
  learning_rate: 0.0001
  patience: 15
  min_delta: 1.0e-05
  seed: 7