Protein Engineering

avgfp · Linear

reference_avgfp_lr_plm_modulof0_20261104-175016

Metrics

Setmsepearsonrspearmanrr2above_wt_nabove_wt_spearmanrbudget_to_maxhit_rate_at_10mean_at_10max_at_10precision_at_10tie_share_at_10captured_at_10hit_rate_at_50mean_at_50max_at_50precision_at_50tie_share_at_50captured_at_50hit_rate_at_100mean_at_100max_at_100precision_at_100tie_share_at_100captured_at_100hit_rate_at_1pctmean_at_1pctmax_at_1pctprecision_at_1pcttie_share_at_1pctcaptured_at_1pct
train0.86410.25940.23450.02891210.00000.04102889.00000.00002.85823.65930.00000.0000-0.14340.08003.08923.87040.00000.00000.08300.07003.06143.87040.00000.00000.05680.06383.05633.87040.00000.00000.0511
validation0.6568-0.0373-0.0010-0.3001216.00000.1293440.00000.00002.56153.62260.00000.0000-1.13050.10002.96123.83140.02000.0000-0.64940.15003.17974.10590.03000.0000-0.27410.00002.64733.62260.00000.0000-1.0149
test0.6841-0.0185-0.0006-0.2037146.0000-0.0728609.00000.20002.86553.74830.00000.0000-0.69840.22003.05453.86720.06000.0000-0.47730.22003.17723.90520.16000.0000-0.26910.14292.83763.74830.00000.0000-0.7206

Loss per epoch

training validation

Config

name: reference_avgfp_lr_plm_modulof0
task: dms
data:
  dataset: avgfp
  encoding: one_hot,aa_index,plm,plm_sum
  split_dir: null
  split_scheme: modulo
  split_fold: 0
model:
  name: lr
train:
  epochs: 300
  batch_size: 128
  learning_rate: 0.0001
  patience: 15
  min_delta: 1.0e-05
  seed: 7