Protein Engineering

avgfp · Linear

reference_avgfp_lr_plm_modulof1_20261104-181125

Metrics

Setmsepearsonrspearmanrr2above_wt_nabove_wt_spearmanrbudget_to_maxhit_rate_at_10mean_at_10max_at_10precision_at_10tie_share_at_10captured_at_10hit_rate_at_50mean_at_50max_at_50precision_at_50tie_share_at_50captured_at_50hit_rate_at_100mean_at_100max_at_100precision_at_100tie_share_at_100captured_at_100hit_rate_at_1pctmean_at_1pctmax_at_1pctprecision_at_1pcttie_share_at_1pctcaptured_at_1pct
train0.45410.75530.69690.50171273.00000.0440309.00000.30003.68253.85240.00000.00000.65570.40003.66893.99120.02000.00000.68490.34003.63563.99120.01000.00000.67730.35963.65773.99120.01120.00000.6963
validation0.54590.00910.0590-0.1745135.00000.0601399.00000.10003.28373.85360.00000.0000-0.12010.22003.28213.85360.08000.0000-0.14270.17003.31453.85360.11000.0000-0.08180.12503.28023.85360.00000.0000-0.1247
test0.6668-0.0516-0.0135-0.3198216.00000.1345461.00000.00002.56153.62260.00000.0000-1.13050.12002.96743.83140.02000.0000-0.63800.13003.15374.10590.03000.0000-0.32530.00002.64733.62260.00000.0000-1.0149

Loss per epoch

training validation

Config

name: reference_avgfp_lr_plm_modulof1
task: dms
data:
  dataset: avgfp
  encoding: one_hot,aa_index,plm,plm_sum
  split_dir: null
  split_scheme: modulo
  split_fold: 1
model:
  name: lr
train:
  epochs: 300
  batch_size: 128
  learning_rate: 0.0001
  patience: 15
  min_delta: 1.0e-05
  seed: 7