Protein Engineering

avgfp · Linear

reference_avgfp_lr_plm_modulof2_20261104-183530

Metrics

Setmsepearsonrspearmanrr2above_wt_nabove_wt_spearmanrbudget_to_maxhit_rate_at_10mean_at_10max_at_10precision_at_10tie_share_at_10captured_at_10hit_rate_at_50mean_at_50max_at_50precision_at_50tie_share_at_50captured_at_50hit_rate_at_100mean_at_100max_at_100precision_at_100tie_share_at_100captured_at_100hit_rate_at_1pctmean_at_1pctmax_at_1pctprecision_at_1pcttie_share_at_1pctcaptured_at_1pct
train0.76850.27630.24540.06431577.00000.07412295.00000.10003.11263.84520.00000.00000.03270.24003.07983.97550.04000.0000-0.00070.21002.98934.00510.03000.0000-0.10370.19442.96614.00510.02780.0000-0.1307
validation0.7911-0.08160.0103-0.1242111.00000.0277417.00000.00002.45903.69390.00000.0000-1.01780.08002.97093.89490.04000.0000-0.34850.18003.03953.89490.18000.0000-0.25580.00002.31303.69390.00000.0000-1.1866
test0.5455-0.00760.0572-0.1736135.00000.0351377.00000.10003.36463.85360.00000.00000.02490.18003.12663.85360.04000.0000-0.46610.19003.37093.85360.12000.00000.04550.12503.31533.85360.00000.0000-0.0626

Loss per epoch

training validation

Config

name: reference_avgfp_lr_plm_modulof2
task: dms
data:
  dataset: avgfp
  encoding: one_hot,aa_index,plm,plm_sum
  split_dir: null
  split_scheme: modulo
  split_fold: 2
model:
  name: lr
train:
  epochs: 300
  batch_size: 128
  learning_rate: 0.0001
  patience: 15
  min_delta: 1.0e-05
  seed: 7