Protein Engineering

avgfp · Linear

reference_avgfp_lr_plm_modulof4_20261105-042232

Metrics

Setmsepearsonrspearmanrr2above_wt_nabove_wt_spearmanrbudget_to_maxhit_rate_at_10mean_at_10max_at_10precision_at_10tie_share_at_10captured_at_10hit_rate_at_50mean_at_50max_at_50precision_at_50tie_share_at_50captured_at_50hit_rate_at_100mean_at_100max_at_100precision_at_100tie_share_at_100captured_at_100hit_rate_at_1pctmean_at_1pctmax_at_1pctprecision_at_1pcttie_share_at_1pctcaptured_at_1pct
train0.49310.73800.68320.45431414.00000.13822708.00000.30003.60363.90810.00000.00000.56680.24003.59413.90810.00000.00000.60500.22003.55904.10790.03000.00000.59530.22023.55874.10790.03670.00000.5984
validation0.6663-0.0653-0.0576-0.1725146.0000-0.0594683.00000.20002.80823.76240.00000.0000-0.78860.26003.07673.82370.04000.0000-0.43590.22003.18173.90520.16000.0000-0.26000.28572.74483.76240.00000.0000-0.8621
test0.5901-0.0573-0.0372-0.1767152.00000.0516333.00000.10002.86163.74860.00000.0000-0.77470.20003.18723.82890.04000.0000-0.27950.22003.18753.89210.16000.0000-0.30270.00002.65463.70310.00000.0000-1.0972

Loss per epoch

training validation

Config

name: reference_avgfp_lr_plm_modulof4
task: dms
data:
  dataset: avgfp
  encoding: one_hot,aa_index,plm,plm_sum
  split_dir: null
  split_scheme: modulo
  split_fold: 4
model:
  name: lr
train:
  epochs: 300
  batch_size: 128
  learning_rate: 0.0001
  patience: 15
  min_delta: 1.0e-05
  seed: 7