Protein Engineering

avgfp · Linear

reference_avgfp_lr_plm_randomf0_20261104-174442

Metrics

Setmsepearsonrspearmanrr2above_wt_nabove_wt_spearmanrbudget_to_maxhit_rate_at_10mean_at_10max_at_10precision_at_10tie_share_at_10captured_at_10hit_rate_at_50mean_at_50max_at_50precision_at_50tie_share_at_50captured_at_50hit_rate_at_100mean_at_100max_at_100precision_at_100tie_share_at_100captured_at_100hit_rate_at_1pctmean_at_1pctmax_at_1pctprecision_at_1pcttie_share_at_1pctcaptured_at_1pct
train0.32520.84260.85990.70972984.00000.25202074.00000.70003.77413.90810.00000.00000.79870.60003.73143.96330.02000.00000.80170.61003.73794.10790.04000.00000.82260.55563.72944.10790.13890.00000.8534
validation0.36290.82410.85330.67891025.00000.2080540.00000.60003.76313.95400.00000.00000.78240.56003.71964.08600.06000.00000.80600.51003.72294.08600.07000.00000.83640.50933.72494.08600.07410.00000.8411
test0.36490.82300.85100.67701035.00000.196627.00000.30003.48353.82910.00000.00000.60450.58003.69184.10680.08000.00000.78890.51003.68694.10680.06000.00000.81190.52783.69084.10680.05560.00000.8177

Loss per epoch

training validation

Config

name: reference_avgfp_lr_plm_randomf0
task: dms
data:
  dataset: avgfp
  encoding: one_hot,aa_index,plm,plm_sum
  split_dir: null
  split_scheme: random
  split_fold: 0
model:
  name: lr
train:
  epochs: 300
  batch_size: 128
  learning_rate: 0.0001
  patience: 15
  min_delta: 1.0e-05
  seed: 7