Protein Engineering

bgl3 · Linear

reference_bgl3_lr_plm_contiguousf0_20261104-175448

Metrics

Setmsepearsonrspearmanrr2above_wt_nabove_wt_spearmanrbudget_to_maxhit_rate_at_10mean_at_10max_at_10precision_at_10tie_share_at_10captured_at_10hit_rate_at_50mean_at_50max_at_50precision_at_50tie_share_at_50captured_at_50hit_rate_at_100mean_at_100max_at_100precision_at_100tie_share_at_100captured_at_100hit_rate_at_1pctmean_at_1pctmax_at_1pctprecision_at_1pcttie_share_at_1pctcaptured_at_1pct
train1.69500.39590.32950.14776904.0000-0.02588361.00000.90000.41711.48330.00000.00000.20900.70000.53152.36370.00000.00000.26910.64000.44693.11600.03000.00000.25480.65500.42003.11600.03510.00000.2571
validation1.54730.26620.26920.06591203.00000.01141838.00000.2000-0.34321.78560.00000.0000-0.00800.3800-0.05381.86900.00000.00000.10620.4200-0.00921.86900.02000.00000.13300.3235-0.24911.78560.00000.00000.0278
test1.93410.26330.25250.03491218.0000-0.0408302.00000.70000.35252.20540.00000.00000.29370.3400-0.06762.45670.06000.00000.20490.4000-0.04462.45670.09000.00000.22920.3721-0.04322.45670.06980.00000.2099

Loss per epoch

training validation

Config

name: reference_bgl3_lr_plm_contiguousf0
task: dms
data:
  dataset: bgl3
  encoding: one_hot,aa_index,plm,plm_sum
  split_dir: null
  split_scheme: contiguous
  split_fold: 0
model:
  name: lr
train:
  epochs: 300
  batch_size: 128
  learning_rate: 0.0001
  patience: 15
  min_delta: 1.0e-05
  seed: 7