Protein Engineering

bgl3 · Linear

reference_bgl3_lr_plm_modulof2_20261104-183558

Metrics

Setmsepearsonrspearmanrr2above_wt_nabove_wt_spearmanrbudget_to_maxhit_rate_at_10mean_at_10max_at_10precision_at_10tie_share_at_10captured_at_10hit_rate_at_50mean_at_50max_at_50precision_at_50tie_share_at_50captured_at_50hit_rate_at_100mean_at_100max_at_100precision_at_100tie_share_at_100captured_at_100hit_rate_at_1pctmean_at_1pctmax_at_1pctprecision_at_1pcttie_share_at_1pctcaptured_at_1pct
train1.66720.31610.27310.08803477.0000-0.05836616.00000.7000-0.14631.35810.00000.00000.05990.58000.19992.20540.00000.00000.18910.49000.01642.45670.07000.00000.13210.4842-0.02622.45670.06320.00000.1158
validation1.29820.24880.22970.0585437.0000-0.0899160.00000.4000-0.02591.69460.00000.00000.12570.4200-0.01412.23910.10000.00000.16280.3900-0.15312.23910.07000.00000.12010.3125-0.19301.69460.00000.00000.0750
test1.43900.27200.28230.0664432.0000-0.0285175.00000.5000-0.10971.78560.00000.00000.14880.4200-0.37932.20540.04000.00000.06290.3700-0.32552.20540.09000.00000.09330.4706-0.05531.78560.00000.00000.1739

Loss per epoch

training validation

Config

name: reference_bgl3_lr_plm_modulof2
task: dms
data:
  dataset: bgl3
  encoding: one_hot,aa_index,plm,plm_sum
  split_dir: null
  split_scheme: modulo
  split_fold: 2
model:
  name: lr
train:
  epochs: 300
  batch_size: 128
  learning_rate: 0.0001
  patience: 15
  min_delta: 1.0e-05
  seed: 7