Protein Engineering

bgl3 · Linear

reference_bgl3_lr_plm_modulof3_20261105-035904

Metrics

Setmsepearsonrspearmanrr2above_wt_nabove_wt_spearmanrbudget_to_maxhit_rate_at_10mean_at_10max_at_10precision_at_10tie_share_at_10captured_at_10hit_rate_at_50mean_at_50max_at_50precision_at_50tie_share_at_50captured_at_50hit_rate_at_100mean_at_100max_at_100precision_at_100tie_share_at_100captured_at_100hit_rate_at_1pctmean_at_1pctmax_at_1pctprecision_at_1pcttie_share_at_1pctcaptured_at_1pct
train1.80540.28060.24990.07713467.0000-0.0351705.00000.60000.21711.78560.00000.00000.18990.4200-0.10132.36370.02000.00000.10630.4800-0.01232.36370.01000.00000.14440.4747-0.02312.36370.01010.00000.1404
validation1.25330.27260.26170.0742437.0000-0.17191465.00000.3000-0.19011.26500.00000.00000.07170.2800-0.23022.20540.02000.00000.06920.3200-0.13382.20540.07000.00000.12150.1875-0.45081.26500.00000.0000-0.0207
test1.30180.24050.22520.0559437.0000-0.0788127.00000.4000-0.02591.69460.00000.00000.12570.4400-0.08632.23910.08000.00000.13330.4000-0.10553.04450.08000.00000.14210.3750-0.15221.69460.00000.00000.0889

Loss per epoch

training validation

Config

name: reference_bgl3_lr_plm_modulof3
task: dms
data:
  dataset: bgl3
  encoding: one_hot,aa_index,plm,plm_sum
  split_dir: null
  split_scheme: modulo
  split_fold: 3
model:
  name: lr
train:
  epochs: 300
  batch_size: 128
  learning_rate: 0.0001
  patience: 15
  min_delta: 1.0e-05
  seed: 7