gb1 · Sequence CNN
reference_gb1_cnn_contiguousf1_20261104-154041
Metrics
| Set | mse | pearsonr | spearmanr | r2 | above_wt_n | above_wt_spearmanr | budget_to_max | hit_rate_at_10 | mean_at_10 | max_at_10 | precision_at_10 | captured_at_10 | hit_rate_at_50 | mean_at_50 | max_at_50 | precision_at_50 | captured_at_50 | hit_rate_at_100 | mean_at_100 | max_at_100 | precision_at_100 | captured_at_100 | hit_rate_at_1pct | mean_at_1pct | max_at_1pct | precision_at_1pct | captured_at_1pct | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| train | 0.1910 | 0.9813 | 0.9815 | 0.9618 | 33066.0000 | 0.8706 | 4087.0000 | 1.0000 | 1.6037 | 1.8220 | 0.3000 | 0.9695 | 1.0000 | 1.4889 | 1.8220 | 0.4400 | 0.9732 | 1.0000 | 1.4553 | 1.8220 | 0.5300 | 0.9795 | 1.0000 | 1.1093 | 1.8220 | 0.7890 | 0.9887 | ||||
| validation | 9.1449 | -0.1246 | -0.0957 | -0.6953 | 2092.0000 | -0.3269 | 17576.0000 | 0.0000 | -5.6425 | -4.4648 | 0.0000 | 0.0000 | -0.3507 | 0.0000 | -5.2037 | -3.3367 | 0.0000 | 0.0000 | -0.2792 | 0.0000 | -4.9487 | -1.8958 | 0.0000 | 0.0000 | -0.2366 | 0.0000 | -4.5081 | -0.3226 | 0.0000 | 0.0000 | -0.1572 |
| test | 3.2649 | -0.1281 | -0.2021 | -0.6179 | 5403.0000 | -0.1238 | 4773.0000 | 0.0000 | -2.9666 | -2.0001 | 0.0000 | 0.0000 | -0.8268 | 0.0000 | -2.1250 | -0.9802 | 0.0000 | 0.0000 | -0.5086 | 0.0100 | -1.9880 | 0.2382 | 0.0000 | 0.0000 | -0.4638 | 0.0100 | -1.8435 | 0.2382 | 0.0000 | 0.0000 | -0.4142 |
Loss per epoch
training
validation
Config
name: reference_gb1_cnn_contiguousf1
task: dms
data:
dataset: gb1
encoding: one_hot,aa_index
split_dir: null
split_scheme: contiguous
split_fold: 1
model:
name: cnn
conv:
- - 128
- 17
- - 128
- 17
- - 128
- 17
hidden:
- 100
dropout: 0.2
train:
epochs: 300
batch_size: 32
learning_rate: 0.0001
patience: 15
min_delta: 1.0e-05
seed: 7