gb1 · Sequence CNN
reference_gb1_cnn_contiguousf2_20261104-164001
Metrics
| Set | mse | pearsonr | spearmanr | r2 | above_wt_n | above_wt_spearmanr | budget_to_max | hit_rate_at_10 | mean_at_10 | max_at_10 | precision_at_10 | tie_share_at_10 | captured_at_10 | hit_rate_at_50 | mean_at_50 | max_at_50 | precision_at_50 | tie_share_at_50 | captured_at_50 | hit_rate_at_100 | mean_at_100 | max_at_100 | precision_at_100 | tie_share_at_100 | captured_at_100 | hit_rate_at_1pct | mean_at_1pct | max_at_1pct | precision_at_1pct | tie_share_at_1pct | captured_at_1pct |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| train | 0.1132 | 0.9842 | 0.9879 | 0.9655 | 40274.0000 | 0.8265 | 1504.0000 | 1.0000 | 1.3270 | 1.4526 | 0.0000 | 0.0000 | 0.8778 | 1.0000 | 1.2415 | 1.4526 | 0.1200 | 0.0000 | 0.9159 | 1.0000 | 1.1870 | 1.4526 | 0.2600 | 0.0000 | 0.9299 | 1.0000 | 0.8891 | 1.8705 | 0.6415 | 0.0000 | 0.9646 |
| validation | 11.2069 | -0.3816 | -0.3338 | -1.0433 | 2473.0000 | -0.4237 | 19457.0000 | 0.0000 | -4.6410 | -2.5146 | 0.0000 | 0.0000 | -0.2444 | 0.0000 | -4.8694 | -2.0362 | 0.0000 | 0.0000 | -0.2952 | 0.0000 | -4.6774 | -0.0137 | 0.0000 | 0.0000 | -0.2596 | 0.0100 | -4.5529 | 0.3635 | 0.0000 | 0.0000 | -0.2386 |
| test | 11.4972 | -0.0824 | -0.0665 | -1.1314 | 2092.0000 | -0.3334 | 18860.0000 | 0.0000 | -4.4856 | -1.3411 | 0.0000 | 0.0000 | -0.1427 | 0.0000 | -3.9025 | -0.4168 | 0.0000 | 0.0000 | -0.0390 | 0.0100 | -3.8258 | 0.2489 | 0.0000 | 0.0000 | -0.0253 | 0.0149 | -3.9014 | 0.3161 | 0.0000 | 0.0000 | -0.0404 |
Loss per epoch
training
validation
Config
name: reference_gb1_cnn_contiguousf2
task: dms
data:
dataset: gb1
encoding: one_hot,aa_index
split_dir: null
split_scheme: contiguous
split_fold: 2
model:
name: cnn
conv:
- - 128
- 17
- - 128
- 17
- - 128
- 17
hidden:
- 100
dropout: 0.2
train:
epochs: 300
batch_size: 32
learning_rate: 0.0001
patience: 15
min_delta: 1.0e-05
seed: 7