gb1 · Sequence CNN
reference_gb1_cnn_contiguousf4_20261104-170503
Metrics
| Set | mse | pearsonr | spearmanr | r2 | above_wt_n | above_wt_spearmanr | budget_to_max | hit_rate_at_10 | mean_at_10 | max_at_10 | precision_at_10 | tie_share_at_10 | captured_at_10 | hit_rate_at_50 | mean_at_50 | max_at_50 | precision_at_50 | tie_share_at_50 | captured_at_50 | hit_rate_at_100 | mean_at_100 | max_at_100 | precision_at_100 | tie_share_at_100 | captured_at_100 | hit_rate_at_1pct | mean_at_1pct | max_at_1pct | precision_at_1pct | tie_share_at_1pct | captured_at_1pct |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| train | 0.3355 | 0.9719 | 0.9576 | 0.9410 | 30951.0000 | 0.7934 | 250.0000 | 1.0000 | 1.5840 | 1.9240 | 0.0000 | 0.0000 | 0.8824 | 1.0000 | 1.5962 | 2.0942 | 0.1000 | 0.0000 | 0.9264 | 1.0000 | 1.5850 | 2.0942 | 0.1500 | 0.0000 | 0.9425 | 0.9995 | 1.3539 | 2.5295 | 0.7209 | 0.0000 | 0.9815 |
| validation | 3.4477 | -0.0576 | -0.1143 | -0.1231 | 1866.0000 | -0.1609 | 14433.0000 | 0.0000 | -2.5705 | -1.5039 | 0.0000 | 0.0000 | -0.1845 | 0.0000 | -2.2086 | -1.2709 | 0.0000 | 0.0000 | -0.0715 | 0.0000 | -2.1036 | -0.9170 | 0.0000 | 0.0000 | -0.0351 | 0.0000 | -2.1247 | -0.9170 | 0.0000 | 0.0000 | -0.0442 |
| test | 4.2724 | 0.2853 | 0.3729 | 0.0366 | 5856.0000 | 0.2863 | 3290.0000 | 1.0000 | 0.4846 | 0.6806 | 0.0000 | 0.0000 | 0.7046 | 1.0000 | 0.5003 | 0.8980 | 0.0000 | 0.0000 | 0.7409 | 1.0000 | 0.5364 | 0.9745 | 0.0000 | 0.0000 | 0.7722 | 0.9602 | 0.3351 | 1.2048 | 0.0398 | 0.0000 | 0.7213 |
Loss per epoch
training
validation
Config
name: reference_gb1_cnn_contiguousf4
task: dms
data:
dataset: gb1
encoding: one_hot,aa_index
split_dir: null
split_scheme: contiguous
split_fold: 4
model:
name: cnn
conv:
- - 128
- 17
- - 128
- 17
- - 128
- 17
hidden:
- 100
dropout: 0.2
train:
epochs: 300
batch_size: 32
learning_rate: 0.0001
patience: 15
min_delta: 1.0e-05
seed: 7