gb1 · Sequence CNN
reference_gb1_cnn_mr20_contiguousf0_20261105-015931
Metrics
| Set | mse | pearsonr | spearmanr | r2 | above_wt_n | above_wt_spearmanr | budget_to_max | hit_rate_at_10 | mean_at_10 | max_at_10 | precision_at_10 | tie_share_at_10 | captured_at_10 | hit_rate_at_50 | mean_at_50 | max_at_50 | precision_at_50 | tie_share_at_50 | captured_at_50 | hit_rate_at_100 | mean_at_100 | max_at_100 | precision_at_100 | tie_share_at_100 | captured_at_100 | hit_rate_at_1pct | mean_at_1pct | max_at_1pct | precision_at_1pct | tie_share_at_1pct | captured_at_1pct |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| train | 0.2647 | 0.9781 | 0.9551 | 0.9549 | 31586.0000 | 0.8790 | 527.0000 | 1.0000 | 1.6936 | 1.9951 | 0.2000 | 0.0000 | 0.9477 | 1.0000 | 1.6929 | 1.9951 | 0.2600 | 0.0000 | 0.9696 | 1.0000 | 1.6592 | 2.0080 | 0.3300 | 0.0000 | 0.9717 | 1.0000 | 1.3746 | 2.1455 | 0.7660 | 0.0000 | 0.9885 |
| validation | 2.1652 | -0.0412 | -0.0534 | -0.0732 | 5223.0000 | 0.1072 | 12222.0000 | 0.7000 | -0.1689 | 0.4060 | 0.0000 | 0.0000 | 0.3794 | 0.4200 | -0.9092 | 0.6815 | 0.0000 | 0.0000 | 0.0557 | 0.3700 | -1.0789 | 0.6815 | 0.0000 | 0.0000 | -0.0243 | 0.3333 | -0.9661 | 0.8438 | 0.0051 | 0.0000 | 0.0315 |
| test | 3.3602 | -0.1435 | -0.2143 | -0.0944 | 1827.0000 | -0.1682 | 17872.0000 | 0.0000 | -3.1061 | -1.7131 | 0.0000 | 0.0000 | -0.3760 | 0.0000 | -2.5711 | -1.1274 | 0.0000 | 0.0000 | -0.2002 | 0.0000 | -2.5914 | -1.1274 | 0.0000 | 0.0000 | -0.2122 | 0.0000 | -2.6066 | -1.1274 | 0.0000 | 0.0000 | -0.2236 |
Loss per epoch
training
validation
Config
name: reference_gb1_cnn_mr20_contiguousf0
task: dms
data:
dataset: gb1
encoding: one_hot,aa_index
split_dir: null
split_scheme: contiguous
split_fold: 0
min_reads: 20
model:
name: cnn
conv:
- - 128
- 17
- - 128
- 17
- - 128
- 17
hidden:
- 100
dropout: 0.2
train:
epochs: 300
batch_size: 32
learning_rate: 0.0001
patience: 15
min_delta: 1.0e-05
seed: 7