gb1 · Sequence CNN
reference_gb1_cnn_mr20_contiguousf2_20261105-023528
Metrics
| Set | mse | pearsonr | spearmanr | r2 | above_wt_n | above_wt_spearmanr | budget_to_max | hit_rate_at_10 | mean_at_10 | max_at_10 | precision_at_10 | tie_share_at_10 | captured_at_10 | hit_rate_at_50 | mean_at_50 | max_at_50 | precision_at_50 | tie_share_at_50 | captured_at_50 | hit_rate_at_100 | mean_at_100 | max_at_100 | precision_at_100 | tie_share_at_100 | captured_at_100 | hit_rate_at_1pct | mean_at_1pct | max_at_1pct | precision_at_1pct | tie_share_at_1pct | captured_at_1pct |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| train | 0.3223 | 0.9621 | 0.9736 | 0.9024 | 38325.0000 | 0.7321 | 1236.0000 | 1.0000 | 1.2659 | 1.4346 | 0.2000 | 0.0000 | 0.9543 | 1.0000 | 1.1888 | 1.4526 | 0.3800 | 0.0000 | 0.9602 | 1.0000 | 1.1586 | 1.4636 | 0.4500 | 0.0000 | 0.9667 | 0.9989 | 0.8378 | 1.4720 | 0.5692 | 0.0000 | 0.9602 |
| validation | 11.9385 | -0.3631 | -0.3343 | -1.1666 | 2441.0000 | -0.4532 | 19702.0000 | 0.0000 | -4.9083 | -0.2560 | 0.0000 | 0.0000 | -0.2935 | 0.0000 | -4.6643 | -0.2560 | 0.0000 | 0.0000 | -0.2490 | 0.0100 | -4.4455 | 0.1603 | 0.0000 | 0.0000 | -0.2074 | 0.0051 | -4.5040 | 0.1603 | 0.0000 | 0.0000 | -0.2238 |
| test | 12.5909 | -0.0934 | -0.0329 | -1.3450 | 2049.0000 | -0.0981 | 10473.0000 | 0.0000 | -4.7244 | -3.9875 | 0.0000 | 0.0000 | -0.1843 | 0.0000 | -5.0545 | -3.9615 | 0.0000 | 0.0000 | -0.2498 | 0.0000 | -5.1684 | -3.7888 | 0.0000 | 0.0000 | -0.2758 | 0.0000 | -5.2043 | -1.1999 | 0.0000 | 0.0000 | -0.2889 |
Loss per epoch
training
validation
Config
name: reference_gb1_cnn_mr20_contiguousf2
task: dms
data:
dataset: gb1
encoding: one_hot,aa_index
split_dir: null
split_scheme: contiguous
split_fold: 2
min_reads: 20
model:
name: cnn
conv:
- - 128
- 17
- - 128
- 17
- - 128
- 17
hidden:
- 100
dropout: 0.2
train:
epochs: 300
batch_size: 32
learning_rate: 0.0001
patience: 15
min_delta: 1.0e-05
seed: 7