gb1 · Sequence CNN
reference_gb1_cnn_mr20_modulof0_20261105-015127
Metrics
| Set | mse | pearsonr | spearmanr | r2 | above_wt_n | above_wt_spearmanr | budget_to_max | hit_rate_at_10 | mean_at_10 | max_at_10 | precision_at_10 | tie_share_at_10 | captured_at_10 | hit_rate_at_50 | mean_at_50 | max_at_50 | precision_at_50 | tie_share_at_50 | captured_at_50 | hit_rate_at_100 | mean_at_100 | max_at_100 | precision_at_100 | tie_share_at_100 | captured_at_100 | hit_rate_at_1pct | mean_at_1pct | max_at_1pct | precision_at_1pct | tie_share_at_1pct | captured_at_1pct |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| train | 0.2180 | 0.9793 | 0.9810 | 0.9541 | 29958.0000 | 0.8813 | 276.0000 | 1.0000 | 1.6569 | 1.8527 | 0.0000 | 0.0000 | 0.9344 | 1.0000 | 1.6509 | 1.8959 | 0.2200 | 0.0000 | 0.9585 | 1.0000 | 1.6595 | 1.9888 | 0.4400 | 0.0000 | 0.9720 | 1.0000 | 1.3490 | 2.1455 | 0.7915 | 0.0000 | 0.9887 |
| validation | 7.4135 | 0.1784 | 0.1491 | -0.2567 | 4092.0000 | 0.1244 | 8993.0000 | 0.4000 | -0.7347 | 0.9744 | 0.0000 | 0.0000 | 0.4503 | 0.4400 | -0.7418 | 0.9744 | 0.0000 | 0.0000 | 0.4612 | 0.3800 | -1.0631 | 0.9744 | 0.0000 | 0.0000 | 0.3811 | 0.3439 | -1.3713 | 1.0752 | 0.0053 | 0.0000 | 0.3009 |
| test | 9.3134 | -0.1257 | -0.1567 | -0.6656 | 2556.0000 | 0.0219 | 14488.0000 | 0.0000 | -5.6399 | -4.2336 | 0.0000 | 0.0000 | -0.7184 | 0.0000 | -5.5457 | -4.2336 | 0.0000 | 0.0000 | -0.7241 | 0.0000 | -5.5840 | -4.1486 | 0.0000 | 0.0000 | -0.7499 | 0.0102 | -5.3655 | 0.3927 | 0.0000 | 0.0000 | -0.7061 |
Loss per epoch
training
validation
Config
name: reference_gb1_cnn_mr20_modulof0
task: dms
data:
dataset: gb1
encoding: one_hot,aa_index
split_dir: null
split_scheme: modulo
split_fold: 0
min_reads: 20
model:
name: cnn
conv:
- - 128
- 17
- - 128
- 17
- - 128
- 17
hidden:
- 100
dropout: 0.2
train:
epochs: 300
batch_size: 32
learning_rate: 0.0001
patience: 15
min_delta: 1.0e-05
seed: 7