gb1 · Sequence CNN
reference_gb1_cnn_mr20_modulof1_20261105-021158
Metrics
| Set | mse | pearsonr | spearmanr | r2 | above_wt_n | above_wt_spearmanr | budget_to_max | hit_rate_at_10 | mean_at_10 | max_at_10 | precision_at_10 | tie_share_at_10 | captured_at_10 | hit_rate_at_50 | mean_at_50 | max_at_50 | precision_at_50 | tie_share_at_50 | captured_at_50 | hit_rate_at_100 | mean_at_100 | max_at_100 | precision_at_100 | tie_share_at_100 | captured_at_100 | hit_rate_at_1pct | mean_at_1pct | max_at_1pct | precision_at_1pct | tie_share_at_1pct | captured_at_1pct |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| train | 0.2704 | 0.9760 | 0.9757 | 0.9475 | 33720.0000 | 0.8680 | 219.0000 | 1.0000 | 1.7014 | 1.8527 | 0.0000 | 0.0000 | 0.9447 | 1.0000 | 1.6275 | 1.8773 | 0.2000 | 0.0000 | 0.9540 | 1.0000 | 1.6336 | 1.8773 | 0.3500 | 0.0000 | 0.9657 | 1.0000 | 1.3684 | 2.1455 | 0.7775 | 0.0000 | 0.9876 |
| validation | 9.3730 | -0.1991 | -0.2197 | -1.0982 | 1519.0000 | 0.0684 | 10640.0000 | 0.0000 | -4.3100 | -2.1718 | 0.0000 | 0.0000 | -0.4086 | 0.0000 | -4.4241 | -0.9280 | 0.0000 | 0.0000 | -0.4574 | 0.0000 | -4.3532 | -0.9280 | 0.0000 | 0.0000 | -0.4459 | 0.0000 | -4.1305 | -0.8403 | 0.0000 | 0.0000 | -0.3910 |
| test | 7.4287 | 0.0170 | 0.0206 | -0.2593 | 4092.0000 | 0.0576 | 16150.0000 | 0.1000 | -1.9625 | 0.7138 | 0.0000 | 0.0000 | 0.1247 | 0.1200 | -1.6642 | 0.8670 | 0.0000 | 0.0000 | 0.2096 | 0.1500 | -1.8082 | 0.8670 | 0.0000 | 0.0000 | 0.1738 | 0.1429 | -2.2106 | 0.9550 | 0.0000 | 0.0000 | 0.0630 |
Loss per epoch
training
validation
Config
name: reference_gb1_cnn_mr20_modulof1
task: dms
data:
dataset: gb1
encoding: one_hot,aa_index
split_dir: null
split_scheme: modulo
split_fold: 1
min_reads: 20
model:
name: cnn
conv:
- - 128
- 17
- - 128
- 17
- - 128
- 17
hidden:
- 100
dropout: 0.2
train:
epochs: 300
batch_size: 32
learning_rate: 0.0001
patience: 15
min_delta: 1.0e-05
seed: 7