gb1 · Sequence CNN
reference_gb1_cnn_mr20_modulof2_20261105-022843
Metrics
| Set | mse | pearsonr | spearmanr | r2 | above_wt_n | above_wt_spearmanr | budget_to_max | hit_rate_at_10 | mean_at_10 | max_at_10 | precision_at_10 | tie_share_at_10 | captured_at_10 | hit_rate_at_50 | mean_at_50 | max_at_50 | precision_at_50 | tie_share_at_50 | captured_at_50 | hit_rate_at_100 | mean_at_100 | max_at_100 | precision_at_100 | tie_share_at_100 | captured_at_100 | hit_rate_at_1pct | mean_at_1pct | max_at_1pct | precision_at_1pct | tie_share_at_1pct | captured_at_1pct |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| train | 0.2308 | 0.9811 | 0.9755 | 0.9583 | 33667.0000 | 0.8647 | 1.0000 | 1.0000 | 1.6014 | 1.8220 | 0.4000 | 0.0000 | 0.9773 | 1.0000 | 1.5176 | 1.8220 | 0.5000 | 0.0000 | 0.9831 | 1.0000 | 1.4588 | 1.8220 | 0.5600 | 0.0000 | 0.9817 | 1.0000 | 1.1221 | 1.8220 | 0.7347 | 0.0000 | 0.9875 |
| validation | 5.1219 | 0.0261 | -0.0642 | -0.1639 | 4400.0000 | -0.2918 | 7521.0000 | 0.0000 | -1.7440 | -1.1647 | 0.0000 | 0.0000 | 0.0533 | 0.0000 | -1.8407 | -0.8305 | 0.0000 | 0.0000 | 0.0290 | 0.0000 | -1.8711 | -0.2872 | 0.0000 | 0.0000 | 0.0212 | 0.0208 | -1.9601 | 0.2257 | 0.0000 | 0.0000 | -0.0034 |
| test | 9.8721 | -0.3732 | -0.3871 | -1.2099 | 1519.0000 | 0.1522 | 13601.0000 | 0.0000 | -5.1857 | -3.8676 | 0.0000 | 0.0000 | -0.6436 | 0.0000 | -5.2377 | -1.2888 | 0.0000 | 0.0000 | -0.6848 | 0.0000 | -5.0140 | -0.9355 | 0.0000 | 0.0000 | -0.6341 | 0.0051 | -4.8263 | 0.2443 | 0.0000 | 0.0000 | -0.5936 |
Loss per epoch
training
validation
Config
name: reference_gb1_cnn_mr20_modulof2
task: dms
data:
dataset: gb1
encoding: one_hot,aa_index
split_dir: null
split_scheme: modulo
split_fold: 2
min_reads: 20
model:
name: cnn
conv:
- - 128
- 17
- - 128
- 17
- - 128
- 17
hidden:
- 100
dropout: 0.2
train:
epochs: 300
batch_size: 32
learning_rate: 0.0001
patience: 15
min_delta: 1.0e-05
seed: 7