gb1 · Sequence CNN
reference_gb1_cnn_mr20_randomf1_20261105-020631
Metrics
| Set | mse | pearsonr | spearmanr | r2 | above_wt_n | above_wt_spearmanr | budget_to_max | hit_rate_at_10 | mean_at_10 | max_at_10 | precision_at_10 | tie_share_at_10 | captured_at_10 | hit_rate_at_50 | mean_at_50 | max_at_50 | precision_at_50 | tie_share_at_50 | captured_at_50 | hit_rate_at_100 | mean_at_100 | max_at_100 | precision_at_100 | tie_share_at_100 | captured_at_100 | hit_rate_at_1pct | mean_at_1pct | max_at_1pct | precision_at_1pct | tie_share_at_1pct | captured_at_1pct |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| train | 0.1558 | 0.9852 | 0.9837 | 0.9703 | 54274.0000 | 0.8954 | 155.0000 | 1.0000 | 1.6694 | 1.7859 | 0.0000 | 0.0000 | 0.9280 | 1.0000 | 1.7277 | 2.0176 | 0.2600 | 0.0000 | 0.9697 | 1.0000 | 1.6850 | 2.0176 | 0.4200 | 0.0000 | 0.9715 | 1.0000 | 1.2981 | 2.1455 | 0.8293 | 0.0000 | 0.9920 |
| validation | 0.2036 | 0.9805 | 0.9786 | 0.9611 | 18134.0000 | 0.8817 | 20.0000 | 1.0000 | 1.6523 | 1.8991 | 0.3000 | 0.0000 | 0.9567 | 1.0000 | 1.6505 | 1.9130 | 0.4800 | 0.0000 | 0.9795 | 1.0000 | 1.6100 | 1.9130 | 0.5800 | 0.0000 | 0.9826 | 1.0000 | 1.2760 | 1.9130 | 0.8159 | 0.0000 | 0.9897 |
| test | 0.2058 | 0.9803 | 0.9783 | 0.9607 | 17972.0000 | 0.8811 | 3.0000 | 1.0000 | 1.6751 | 1.9362 | 0.3000 | 0.0000 | 0.9665 | 1.0000 | 1.6080 | 1.9362 | 0.4200 | 0.0000 | 0.9731 | 1.0000 | 1.5674 | 1.9362 | 0.5200 | 0.0000 | 0.9763 | 1.0000 | 1.2720 | 1.9362 | 0.8044 | 0.0000 | 0.9900 |
Loss per epoch
training
validation
Config
name: reference_gb1_cnn_mr20_randomf1
task: dms
data:
dataset: gb1
encoding: one_hot,aa_index
split_dir: null
split_scheme: random
split_fold: 1
min_reads: 20
model:
name: cnn
conv:
- - 128
- 17
- - 128
- 17
- - 128
- 17
hidden:
- 100
dropout: 0.2
train:
epochs: 300
batch_size: 32
learning_rate: 0.0001
patience: 15
min_delta: 1.0e-05
seed: 7