gb1 · Sequence CNN
reference_gb1_cnn_mr20_randomf2_20261105-022321
Metrics
| Set | mse | pearsonr | spearmanr | r2 | above_wt_n | above_wt_spearmanr | budget_to_max | hit_rate_at_10 | mean_at_10 | max_at_10 | precision_at_10 | tie_share_at_10 | captured_at_10 | hit_rate_at_50 | mean_at_50 | max_at_50 | precision_at_50 | tie_share_at_50 | captured_at_50 | hit_rate_at_100 | mean_at_100 | max_at_100 | precision_at_100 | tie_share_at_100 | captured_at_100 | hit_rate_at_1pct | mean_at_1pct | max_at_1pct | precision_at_1pct | tie_share_at_1pct | captured_at_1pct |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| train | 0.1336 | 0.9872 | 0.9860 | 0.9745 | 54119.0000 | 0.9048 | 141.0000 | 1.0000 | 1.7678 | 1.9888 | 0.2000 | 0.0000 | 0.9565 | 1.0000 | 1.7278 | 1.9951 | 0.3200 | 0.0000 | 0.9736 | 1.0000 | 1.7066 | 1.9951 | 0.4700 | 0.0000 | 0.9799 | 1.0000 | 1.2927 | 2.1455 | 0.8309 | 0.0000 | 0.9923 |
| validation | 0.2028 | 0.9806 | 0.9786 | 0.9614 | 18127.0000 | 0.8896 | 22.0000 | 1.0000 | 1.6870 | 1.8220 | 0.1000 | 0.0000 | 0.9531 | 1.0000 | 1.6395 | 2.0176 | 0.4000 | 0.0000 | 0.9702 | 1.0000 | 1.5974 | 2.0176 | 0.5300 | 0.0000 | 0.9781 | 1.0000 | 1.2954 | 2.0176 | 0.8322 | 0.0000 | 0.9910 |
| test | 0.2046 | 0.9804 | 0.9785 | 0.9609 | 18134.0000 | 0.8872 | 174.0000 | 1.0000 | 1.7059 | 1.8375 | 0.2000 | 0.0000 | 0.9692 | 1.0000 | 1.6389 | 1.8991 | 0.4800 | 0.0000 | 0.9767 | 1.0000 | 1.5964 | 1.8991 | 0.5700 | 0.0000 | 0.9793 | 1.0000 | 1.2746 | 1.9130 | 0.8150 | 0.0000 | 0.9893 |
Loss per epoch
training
validation
Config
name: reference_gb1_cnn_mr20_randomf2
task: dms
data:
dataset: gb1
encoding: one_hot,aa_index
split_dir: null
split_scheme: random
split_fold: 2
min_reads: 20
model:
name: cnn
conv:
- - 128
- 17
- - 128
- 17
- - 128
- 17
hidden:
- 100
dropout: 0.2
train:
epochs: 300
batch_size: 32
learning_rate: 0.0001
patience: 15
min_delta: 1.0e-05
seed: 7