gb1 · Sequence CNN
reference_gb1_cnn_mr5_contiguousf0_20261105-010106
Metrics
| Set | mse | pearsonr | spearmanr | r2 | above_wt_n | above_wt_spearmanr | budget_to_max | hit_rate_at_10 | mean_at_10 | max_at_10 | precision_at_10 | tie_share_at_10 | captured_at_10 | hit_rate_at_50 | mean_at_50 | max_at_50 | precision_at_50 | tie_share_at_50 | captured_at_50 | hit_rate_at_100 | mean_at_100 | max_at_100 | precision_at_100 | tie_share_at_100 | captured_at_100 | hit_rate_at_1pct | mean_at_1pct | max_at_1pct | precision_at_1pct | tie_share_at_1pct | captured_at_1pct |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| train | 0.2490 | 0.9816 | 0.9657 | 0.9574 | 32202.0000 | 0.9240 | 172.0000 | 1.0000 | 1.6817 | 1.9951 | 0.0000 | 0.0000 | 0.9204 | 1.0000 | 1.7126 | 2.0942 | 0.1800 | 0.0000 | 0.9555 | 1.0000 | 1.6879 | 2.1110 | 0.3100 | 0.0000 | 0.9645 | 1.0000 | 1.4191 | 2.1952 | 0.8135 | 0.0000 | 0.9923 |
| validation | 2.1880 | 0.0078 | 0.0051 | -0.0850 | 5374.0000 | 0.0994 | 2457.0000 | 0.4000 | -1.1754 | 0.9431 | 0.0000 | 0.0000 | -0.0695 | 0.4800 | -0.9260 | 0.9431 | 0.0000 | 0.0000 | 0.0420 | 0.4800 | -0.7785 | 0.9431 | 0.0100 | 0.0000 | 0.1145 | 0.4400 | -0.8064 | 1.0089 | 0.0150 | 0.0000 | 0.1055 |
| test | 4.5179 | -0.1164 | -0.1765 | -0.4720 | 1864.0000 | -0.1443 | 11921.0000 | 0.0000 | -2.7259 | -1.7131 | 0.0000 | 0.0000 | -0.2411 | 0.0000 | -2.5502 | -1.1274 | 0.0000 | 0.0000 | -0.1940 | 0.0000 | -2.5728 | -1.1274 | 0.0000 | 0.0000 | -0.2073 | 0.0000 | -2.5626 | -1.1274 | 0.0000 | 0.0000 | -0.2095 |
Loss per epoch
training
validation
Config
name: reference_gb1_cnn_mr5_contiguousf0
task: dms
data:
dataset: gb1
encoding: one_hot,aa_index
split_dir: null
split_scheme: contiguous
split_fold: 0
min_reads: 5
model:
name: cnn
conv:
- - 128
- 17
- - 128
- 17
- - 128
- 17
hidden:
- 100
dropout: 0.2
train:
epochs: 300
batch_size: 32
learning_rate: 0.0001
patience: 15
min_delta: 1.0e-05
seed: 7