gb1 · Sequence CNN

reference_gb1_cnn_mr5_randomf2_20261105-012830

Metrics

Set	mse	pearsonr	spearmanr	r2	above_wt_n	above_wt_spearmanr	budget_to_max	hit_rate_at_10	mean_at_10	max_at_10	precision_at_10	captured_at_10	hit_rate_at_50	mean_at_50	max_at_50	precision_at_50	captured_at_50	hit_rate_at_100	mean_at_100	max_at_100	precision_at_100	captured_at_100	hit_rate_at_1pct	mean_at_1pct	max_at_1pct	precision_at_1pct	captured_at_1pct
train	0.1540	0.9852	0.9844	0.9704	56304.0000	0.8849	29.0000	1.0000	1.6996	1.8527	0.0000	0.9007	1.0000	1.7036	2.5295	0.2400	0.9462	1.0000	1.6773	2.5295	0.2700	0.9583	1.0000	1.3109	2.5295	0.8241	0.9906
validation	0.2056	0.9801	0.9790	0.9603	18603.0000	0.8713	28.0000	1.0000	1.5744	1.7859	0.0000	0.9042	1.0000	1.6364	2.0888	0.3200	0.9583	1.0000	1.5940	2.0888	0.4800	0.9654	1.0000	1.3027	2.0888	0.8095	0.9895
test	0.2099	0.9798	0.9784	0.9597	18674.0000	0.8717	60.0000	1.0000	1.6519	1.9362	0.1000	0.9296	1.0000	1.6687	2.0176	0.4400	0.9670	1.0000	1.6369	2.0975	0.5900	0.9775	1.0000	1.2902	2.0975	0.8002	0.9886

Loss per epoch

training validation

Config

name: reference_gb1_cnn_mr5_randomf2
task: dms
data:
  dataset: gb1
  encoding: one_hot,aa_index
  split_dir: null
  split_scheme: random
  split_fold: 2
  min_reads: 5
model:
  name: cnn
  conv:
  - - 128
    - 17
  - - 128
    - 17
  - - 128
    - 17
  hidden:
  - 100
  dropout: 0.2
train:
  epochs: 300
  batch_size: 32
  learning_rate: 0.0001
  patience: 15
  min_delta: 1.0e-05
  seed: 7