gb1 · Sequence CNN
reference_gb1_cnn_plm_contiguousf1_20261104-181652
Metrics
| Set | mse | pearsonr | spearmanr | r2 | above_wt_n | above_wt_spearmanr | budget_to_max | hit_rate_at_10 | mean_at_10 | max_at_10 | precision_at_10 | tie_share_at_10 | captured_at_10 | hit_rate_at_50 | mean_at_50 | max_at_50 | precision_at_50 | tie_share_at_50 | captured_at_50 | hit_rate_at_100 | mean_at_100 | max_at_100 | precision_at_100 | tie_share_at_100 | captured_at_100 | hit_rate_at_1pct | mean_at_1pct | max_at_1pct | precision_at_1pct | tie_share_at_1pct | captured_at_1pct |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| train | 0.4245 | 0.9656 | 0.9664 | 0.9150 | 33066.0000 | 0.7608 | 1987.0000 | 1.0000 | 1.5733 | 1.8220 | 0.2000 | 0.0000 | 0.9620 | 1.0000 | 1.4644 | 1.8220 | 0.3600 | 0.0000 | 0.9670 | 1.0000 | 1.4191 | 1.8220 | 0.4400 | 0.0000 | 0.9702 | 0.9995 | 1.0664 | 1.8220 | 0.6916 | 0.0000 | 0.9765 |
| validation | 5.4412 | 0.2348 | 0.2268 | -0.0087 | 2092.0000 | -0.0401 | 17350.0000 | 0.6000 | 0.1648 | 1.3758 | 0.0000 | 0.0000 | 0.6931 | 0.5200 | -0.3305 | 1.5894 | 0.0000 | 0.0000 | 0.6206 | 0.5000 | -0.5222 | 1.5894 | 0.0100 | 0.0000 | 0.5963 | 0.4229 | -0.8981 | 1.5894 | 0.0597 | 0.0000 | 0.5378 |
| test | 5.6243 | -0.1485 | -0.2241 | -1.7871 | 5403.0000 | -0.0908 | 6984.0000 | 0.2000 | -1.2248 | 0.5937 | 0.0000 | 0.0000 | -0.0894 | 0.1800 | -1.6297 | 0.5937 | 0.0000 | 0.0000 | -0.2819 | 0.1300 | -1.7888 | 0.5937 | 0.0000 | 0.0000 | -0.3690 | 0.1393 | -1.6132 | 0.7714 | 0.0000 | 0.0000 | -0.2993 |
Loss per epoch
training
validation
Config
name: reference_gb1_cnn_plm_contiguousf1
task: dms
data:
dataset: gb1
encoding: one_hot,aa_index,plm,plm_sum
split_dir: null
split_scheme: contiguous
split_fold: 1
model:
name: cnn
conv:
- - 128
- 17
- - 128
- 17
- - 128
- 17
hidden:
- 100
dropout: 0.2
train:
epochs: 300
batch_size: 32
learning_rate: 0.0001
patience: 15
min_delta: 1.0e-05
seed: 7