gb1 · Sequence CNN
reference_gb1_cnn_plm_modulof0_20261104-175105
Metrics
| Set | mse | pearsonr | spearmanr | r2 | above_wt_n | above_wt_spearmanr | budget_to_max | hit_rate_at_10 | mean_at_10 | max_at_10 | precision_at_10 | tie_share_at_10 | captured_at_10 | hit_rate_at_50 | mean_at_50 | max_at_50 | precision_at_50 | tie_share_at_50 | captured_at_50 | hit_rate_at_100 | mean_at_100 | max_at_100 | precision_at_100 | tie_share_at_100 | captured_at_100 | hit_rate_at_1pct | mean_at_1pct | max_at_1pct | precision_at_1pct | tie_share_at_1pct | captured_at_1pct |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| train | 0.2862 | 0.9708 | 0.9733 | 0.9395 | 31059.0000 | 0.8225 | 58.0000 | 1.0000 | 1.5585 | 1.8209 | 0.0000 | 0.0000 | 0.8597 | 1.0000 | 1.6373 | 2.0942 | 0.1000 | 0.0000 | 0.9278 | 1.0000 | 1.6562 | 2.5295 | 0.2900 | 0.0000 | 0.9526 | 1.0000 | 1.3650 | 2.5295 | 0.7650 | 0.0000 | 0.9853 |
| validation | 4.8291 | 0.4541 | 0.4193 | 0.1672 | 4408.0000 | 0.1217 | 10015.0000 | 0.0000 | -4.2494 | -0.6483 | 0.0000 | 0.0000 | -0.4846 | 0.2800 | -2.4982 | 0.8154 | 0.0000 | 0.0000 | -0.0365 | 0.3600 | -1.8682 | 0.8636 | 0.0000 | 0.0000 | 0.1375 | 0.4975 | -1.1746 | 1.0813 | 0.0050 | 0.0000 | 0.3389 |
| test | 6.7599 | 0.1094 | 0.0885 | -0.2111 | 2689.0000 | 0.0001 | 6497.0000 | 0.1000 | -3.9896 | 0.0082 | 0.0000 | 0.0000 | -0.3033 | 0.0800 | -3.7712 | 0.2611 | 0.0000 | 0.0000 | -0.2621 | 0.1300 | -3.3505 | 1.0250 | 0.0100 | 0.0000 | -0.1558 | 0.1144 | -3.3247 | 1.0250 | 0.0149 | 0.0000 | -0.1527 |
Loss per epoch
training
validation
Config
name: reference_gb1_cnn_plm_modulof0
task: dms
data:
dataset: gb1
encoding: one_hot,aa_index,plm,plm_sum
split_dir: null
split_scheme: modulo
split_fold: 0
model:
name: cnn
conv:
- - 128
- 17
- - 128
- 17
- - 128
- 17
hidden:
- 100
dropout: 0.2
train:
epochs: 300
batch_size: 32
learning_rate: 0.0001
patience: 15
min_delta: 1.0e-05
seed: 7