gb1 · Sequence CNN
reference_gb1_cnn_plm_modulof1_20261104-181150
Metrics
| Set | mse | pearsonr | spearmanr | r2 | above_wt_n | above_wt_spearmanr | budget_to_max | hit_rate_at_10 | mean_at_10 | max_at_10 | precision_at_10 | tie_share_at_10 | captured_at_10 | hit_rate_at_50 | mean_at_50 | max_at_50 | precision_at_50 | tie_share_at_50 | captured_at_50 | hit_rate_at_100 | mean_at_100 | max_at_100 | precision_at_100 | tie_share_at_100 | captured_at_100 | hit_rate_at_1pct | mean_at_1pct | max_at_1pct | precision_at_1pct | tie_share_at_1pct | captured_at_1pct |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| train | 0.2432 | 0.9789 | 0.9788 | 0.9525 | 35035.0000 | 0.8635 | 103.0000 | 1.0000 | 1.6319 | 1.9888 | 0.0000 | 0.0000 | 0.8642 | 1.0000 | 1.6731 | 2.0176 | 0.0800 | 0.0000 | 0.9240 | 1.0000 | 1.6595 | 2.0888 | 0.2100 | 0.0000 | 0.9445 | 1.0000 | 1.3930 | 2.5295 | 0.7546 | 0.0000 | 0.9853 |
| validation | 7.1910 | -0.2132 | -0.2124 | -0.6194 | 1545.0000 | 0.0077 | 14526.0000 | 0.0000 | -4.4037 | -2.1138 | 0.0000 | 0.0000 | -0.4369 | 0.0000 | -4.2999 | -0.8450 | 0.0000 | 0.0000 | -0.4266 | 0.0000 | -4.4479 | -0.5366 | 0.0000 | 0.0000 | -0.4772 | 0.0000 | -4.1054 | -0.3101 | 0.0000 | 0.0000 | -0.3882 |
| test | 6.4837 | 0.1047 | 0.0941 | -0.1181 | 4408.0000 | -0.0730 | 14436.0000 | 0.0000 | -3.8372 | -0.6300 | 0.0000 | 0.0000 | -0.3787 | 0.0000 | -2.9679 | -0.3156 | 0.0000 | 0.0000 | -0.1637 | 0.0000 | -3.0048 | -0.0082 | 0.0000 | 0.0000 | -0.1781 | 0.0201 | -2.9117 | 0.2535 | 0.0000 | 0.0000 | -0.1563 |
Loss per epoch
training
validation
Config
name: reference_gb1_cnn_plm_modulof1
task: dms
data:
dataset: gb1
encoding: one_hot,aa_index,plm,plm_sum
split_dir: null
split_scheme: modulo
split_fold: 1
model:
name: cnn
conv:
- - 128
- 17
- - 128
- 17
- - 128
- 17
hidden:
- 100
dropout: 0.2
train:
epochs: 300
batch_size: 32
learning_rate: 0.0001
patience: 15
min_delta: 1.0e-05
seed: 7