gb1 · Sequence CNN
reference_gb1_cnn_plm_modulof3_20261105-035924
Metrics
| Set | mse | pearsonr | spearmanr | r2 | above_wt_n | above_wt_spearmanr | budget_to_max | hit_rate_at_10 | mean_at_10 | max_at_10 | precision_at_10 | tie_share_at_10 | captured_at_10 | hit_rate_at_50 | mean_at_50 | max_at_50 | precision_at_50 | tie_share_at_50 | captured_at_50 | hit_rate_at_100 | mean_at_100 | max_at_100 | precision_at_100 | tie_share_at_100 | captured_at_100 | hit_rate_at_1pct | mean_at_1pct | max_at_1pct | precision_at_1pct | tie_share_at_1pct | captured_at_1pct |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| train | 0.1884 | 0.9827 | 0.9762 | 0.9651 | 29512.0000 | 0.8575 | 107.0000 | 1.0000 | 1.3184 | 1.4526 | 0.0000 | 0.0000 | 0.9172 | 1.0000 | 1.2161 | 1.4526 | 0.2800 | 0.0000 | 0.9476 | 1.0000 | 1.1771 | 1.4526 | 0.3500 | 0.0000 | 0.9569 | 0.9990 | 0.9070 | 1.8705 | 0.6854 | 0.0000 | 0.9800 |
| validation | 6.6788 | -0.2001 | -0.2002 | -0.4454 | 3230.0000 | -0.1830 | 20014.0000 | 0.0000 | -3.2055 | -1.0330 | 0.0000 | 0.0000 | -0.2445 | 0.0000 | -2.8737 | -0.7837 | 0.0000 | 0.0000 | -0.1636 | 0.0000 | -3.1816 | -0.6465 | 0.0000 | 0.0000 | -0.2529 | 0.0149 | -2.9566 | 0.3953 | 0.0000 | 0.0000 | -0.1955 |
| test | 4.9457 | 0.1150 | 0.1136 | -0.1276 | 4705.0000 | -0.1243 | 11801.0000 | 0.1000 | -1.7407 | 0.1697 | 0.0000 | 0.0000 | 0.0426 | 0.1200 | -1.3439 | 1.1792 | 0.0000 | 0.0000 | 0.1517 | 0.1400 | -1.4386 | 1.1792 | 0.0000 | 0.0000 | 0.1296 | 0.1900 | -1.2904 | 1.1792 | 0.0000 | 0.0000 | 0.1755 |
Loss per epoch
training
validation
Config
name: reference_gb1_cnn_plm_modulof3
task: dms
data:
dataset: gb1
encoding: one_hot,aa_index,plm,plm_sum
split_dir: null
split_scheme: modulo
split_fold: 3
model:
name: cnn
conv:
- - 128
- 17
- - 128
- 17
- - 128
- 17
hidden:
- 100
dropout: 0.2
train:
epochs: 300
batch_size: 32
learning_rate: 0.0001
patience: 15
min_delta: 1.0e-05
seed: 7