gb1 · Sequence CNN
reference_gb1_cnn_plm_modulof4_20261105-042317
Metrics
| Set | mse | pearsonr | spearmanr | r2 | above_wt_n | above_wt_spearmanr | budget_to_max | hit_rate_at_10 | mean_at_10 | max_at_10 | precision_at_10 | tie_share_at_10 | captured_at_10 | hit_rate_at_50 | mean_at_50 | max_at_50 | precision_at_50 | tie_share_at_50 | captured_at_50 | hit_rate_at_100 | mean_at_100 | max_at_100 | precision_at_100 | tie_share_at_100 | captured_at_100 | hit_rate_at_1pct | mean_at_1pct | max_at_1pct | precision_at_1pct | tie_share_at_1pct | captured_at_1pct |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| train | 0.1625 | 0.9841 | 0.9849 | 0.9681 | 35489.0000 | 0.8834 | 54.0000 | 1.0000 | 1.7790 | 1.9951 | 0.0000 | 0.0000 | 0.9090 | 1.0000 | 1.7433 | 2.0176 | 0.2200 | 0.0000 | 0.9470 | 1.0000 | 1.7246 | 2.5295 | 0.3700 | 0.0000 | 0.9626 | 1.0000 | 1.3985 | 2.5295 | 0.8368 | 0.0000 | 0.9909 |
| validation | 6.7503 | 0.0559 | 0.0223 | -0.2094 | 2689.0000 | -0.0922 | 11153.0000 | 0.1000 | -2.3738 | 0.0535 | 0.0000 | 0.0000 | 0.0986 | 0.1400 | -2.2006 | 0.4648 | 0.0000 | 0.0000 | 0.1492 | 0.1600 | -2.0692 | 1.0250 | 0.0200 | 0.0000 | 0.1883 | 0.1393 | -2.0575 | 1.0250 | 0.0149 | 0.0000 | 0.1963 |
| test | 7.4662 | -0.3003 | -0.3036 | -0.6158 | 3230.0000 | -0.2125 | 19851.0000 | 0.0000 | -3.7775 | -0.6394 | 0.0000 | 0.0000 | -0.3945 | 0.0000 | -3.6889 | -0.6394 | 0.0000 | 0.0000 | -0.3855 | 0.0100 | -3.9065 | 0.0267 | 0.0000 | 0.0000 | -0.4547 | 0.0149 | -3.7938 | 0.1856 | 0.0000 | 0.0000 | -0.4349 |
Loss per epoch
training
validation
Config
name: reference_gb1_cnn_plm_modulof4
task: dms
data:
dataset: gb1
encoding: one_hot,aa_index,plm,plm_sum
split_dir: null
split_scheme: modulo
split_fold: 4
model:
name: cnn
conv:
- - 128
- 17
- - 128
- 17
- - 128
- 17
hidden:
- 100
dropout: 0.2
train:
epochs: 300
batch_size: 32
learning_rate: 0.0001
patience: 15
min_delta: 1.0e-05
seed: 7