gb1 · Fully connected
reference_gb1_fc_plm_contiguousf3_20261105-040600
Metrics
| Set | mse | pearsonr | spearmanr | r2 | above_wt_n | above_wt_spearmanr | budget_to_max | hit_rate_at_10 | mean_at_10 | max_at_10 | precision_at_10 | tie_share_at_10 | captured_at_10 | hit_rate_at_50 | mean_at_50 | max_at_50 | precision_at_50 | tie_share_at_50 | captured_at_50 | hit_rate_at_100 | mean_at_100 | max_at_100 | precision_at_100 | tie_share_at_100 | captured_at_100 | hit_rate_at_1pct | mean_at_1pct | max_at_1pct | precision_at_1pct | tie_share_at_1pct | captured_at_1pct |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| train | 0.4222 | 0.9712 | 0.9757 | 0.9134 | 30012.0000 | 0.8123 | 130.0000 | 1.0000 | 1.6791 | 1.8527 | 0.0000 | 0.0000 | 0.8897 | 1.0000 | 1.6484 | 2.0080 | 0.1800 | 0.0000 | 0.9329 | 1.0000 | 1.6447 | 2.0176 | 0.3000 | 0.0000 | 0.9534 | 1.0000 | 1.3297 | 2.5295 | 0.7551 | 0.0000 | 0.9823 |
| validation | 5.1019 | 0.1489 | 0.0452 | -0.1504 | 5856.0000 | 0.0127 | 11966.0000 | 0.2000 | -1.0593 | 0.2938 | 0.0000 | 0.0000 | 0.1732 | 0.1000 | -1.3483 | 0.2938 | 0.0000 | 0.0000 | 0.0770 | 0.1100 | -1.3219 | 0.7608 | 0.0000 | 0.0000 | 0.0885 | 0.1095 | -1.2989 | 0.7608 | 0.0000 | 0.0000 | 0.1002 |
| test | 6.8764 | 0.2895 | 0.2786 | -0.2538 | 2473.0000 | -0.0218 | 6563.0000 | 0.3000 | -2.6274 | 0.8134 | 0.0000 | 0.0000 | 0.1589 | 0.4600 | -1.2787 | 1.0255 | 0.0000 | 0.0000 | 0.4364 | 0.4300 | -1.5055 | 1.0255 | 0.0000 | 0.0000 | 0.3956 | 0.4750 | -1.3486 | 1.4054 | 0.0100 | 0.0000 | 0.4366 |
Loss per epoch
training
validation
Config
name: reference_gb1_fc_plm_contiguousf3 task: dms data: dataset: gb1 encoding: one_hot,aa_index,plm,plm_sum split_dir: null split_scheme: contiguous split_fold: 3 model: name: fcn hidden: - 1000 dropout: 0.2 train: epochs: 300 batch_size: 64 learning_rate: 0.0001 patience: 15 min_delta: 1.0e-05 seed: 7