gb1 · Fully connected

reference_gb1_fc_plm_modulof3_20261105-035924

Metrics

Set	mse	pearsonr	spearmanr	r2	above_wt_n	above_wt_spearmanr	budget_to_max	hit_rate_at_10	mean_at_10	max_at_10	captured_at_10	hit_rate_at_50	mean_at_50	max_at_50	precision_at_50	captured_at_50	hit_rate_at_100	mean_at_100	max_at_100	precision_at_100	captured_at_100	hit_rate_at_1pct	mean_at_1pct	max_at_1pct	precision_at_1pct	captured_at_1pct
train	0.3015	0.9782	0.9714	0.9442	29512.0000	0.8285	1966.0000	1.0000	1.3132	1.4526	0.9160	1.0000	1.2364	1.4526	0.2400	0.9526	1.0000	1.1892	1.4526	0.3700	0.9599	0.9990	0.8982	1.6726	0.6633	0.9776
validation	4.3307	0.2535	0.2497	0.0627	3230.0000	-0.0579	18775.0000	0.4000	-1.4207	0.7287	0.2235	0.3400	-1.3575	0.7417	0.0000	0.2493	0.3100	-1.4996	0.7417	0.0000	0.2153	0.2786	-1.5567	1.2115	0.0050	0.2048
test	4.0144	0.3178	0.3051	0.0847	4705.0000	0.0277	2708.0000	0.8000	0.1281	1.6132	0.5081	0.7200	0.1890	1.6132	0.0000	0.5612	0.7100	0.1771	1.6132	0.0100	0.5720	0.6800	0.1033	1.6132	0.0150	0.5691

Loss per epoch

training validation

Config

name: reference_gb1_fc_plm_modulof3
task: dms
data:
  dataset: gb1
  encoding: one_hot,aa_index,plm,plm_sum
  split_dir: null
  split_scheme: modulo
  split_fold: 3
model:
  name: fcn
  hidden:
  - 1000
  dropout: 0.2
train:
  epochs: 300
  batch_size: 64
  learning_rate: 0.0001
  patience: 15
  min_delta: 1.0e-05
  seed: 7